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Jose Arcadio Buendia

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Recent activity by Jose Arcadio Buendia Sort by recent activity Recent activity Votes

  • GATK Liftover memory issues on cohort vcf

    Answered
    1. Community
    2. Germline

    Dear GATK team, I've been attempting to LiftOver a chromosome from the 1000 genomes cohort going from hg38 to hg37. However, I keep running into memory errors.    Do I just need to throw more heap ...

    • Jose Arcadio Buendia
    • 3 followers
    • 11 comments
    • 0 votes

  • Out of memory error using OpenJDK vs Oracle JDK for CNV-LOH

    1. Community
    2. Other

    Previously I have been able to run the CNV-LOH pipeline with no problems whatsoever. However recently Oracle JDK made a change to their license that has prevented our institution from using their s...

    • Jose Arcadio Buendia
    • Edited
    • 3 followers
    • 3 comments
    • 2 votes