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Anish Bhaswanth

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Latest activity by Anish Bhaswanth
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    Anish Bhaswanth created a post,

    Mutect2 - Bad input: GenomicsDBImport does not support GVCFs with MNPs

    I'm running Mutect2 to generate PoN on four normal samples. It fails at the second step below. a) GATK version used gatk v4.1.5.0 b) Exact GATK commands used gatk Mutect2 \        -R $ref \        ...

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    Anish Bhaswanth created a post,

    Mutect2 does not need normal BAM anymore?

    a) GATK version used: gatk v4.1.4.0b) Exact GATK commands used gatk --java-options "-Xmx32g" Mutect2 \     -R $ref \     -L $interval_list     -I tumor.bam     --germline-resource somatic-hg38-af-o...