Jeff Duty
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Why does my vcf contain a genotype when there are no reads supporting it?
Can you please provide a) GATK version used 4.1.4.1 b) Exact GATK commands used: gatk HaplotypeCaller --native-pair-hmm-threads 4 -I {sortedBamFile} -R {refFasta} -L {bedFile} -O {vcfFile} --output...