Nguyen Nguyen Thanh
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a) GATK version used: 220.127.116.11b) Exact GATK commands used: gatk HaplotypeCaller -I NA12878.final.cram -O NA12878.final.vcf -R GRCh38_full_analysis_set_plus_decoy_hla.fa -L vdj_hg38.bed c) The entire...
Question: Picard - MergeBamAlignment: Reads remaining on alignment iterator
Hi, I'm new to genome analysis and I need some advice on this. I'm currently follow GATK best practice, now I'm stuck at the MergeBamAlignment step of picard. I'm using the data from https://www.in...