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3. FilterMutectCalls Error: java.lang.IllegalArgumentException: log10 p: Values must be non-infinite and non-NAN

Hey Tiffany, I updated my version of GATK as you suggested and FilterMutectCalls seems to be working now.  Thank you!

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• Jared Jurss
• March 05, 2020 22:38
• 0 votes

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3. MergeBamAlignment Error: ArrayIndexOutOfBoundsException

My original BAM file had some messed up alignments in it.  I made a new BAM file and solved the issue.  Thank you

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• Jared Jurss
• February 27, 2020 18:00
• 1 vote

1. Community
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3. MergeBamAlignment Error: ArrayIndexOutOfBoundsException

Have also run with Oracle 1.8, same error

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• Jared Jurss
• February 20, 2020 17:28
• 1 vote