Sophie Agger
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Activity overview
Latest activity by Sophie Agger-
Sophie Agger commented,
I've had a technical issue with this tool. If your disk is full, it doesn't throw an error, but just keeps chugging along. In most cases you'd notice this due to lack of EOL, but in theory this cou...
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Sophie Agger commented,
Joanna yes, it's not related to species.
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Sophie Agger commented,
Thank you Andrey :)
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Sophie Agger commented,
Hi Bhanu, That's where I started, I couldn't find the answer there which is why I tried the forum. Since the sample files are just called .bam I assumed that I was supposed to use the raw bam file,...
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Sophie Agger created a post,
(How to) Call common and rare germline copy number variants - which bamfile
This is a general question. When using the above mentioned pipeline, which bam-files are you supposed to use. Do you go through the whole, realign, markduplicate, deduplicate or do you use the bam...