Laura Cottino

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Latest activity by Laura Cottino
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    Laura Cottino created a post,

    GenomeSTRiP SVGenotyper not producing genotypes

    Hi,  We ran SVGenotyper on our VCF output from the CNVDiscovery pipeline, however, the GT and GQ fields in the resulting VCF are empty (they just have a ".") for all of the CNVs. This is an example...

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    Laura Cottino commented,

    We have resumed it and it take some time (over 12 hours) to fail again. When we look at the output files it seems as if it is the same jobs that are failing. 

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    Laura Cottino created a post,

    Problem running GenomeSTRiP CNVDiscovery on X chromosome

    Hi there, We have run the GenomeSTRiP CNVDiscovery pipeline on all of the autosomes as well as the Y chromosome of ~500 whole genome sequences successfully (we ran each chromosome separately). This...