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mons7re

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Latest activity by mons7re
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    mons7re commented,

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    3. VariantFiltration Invalid Argument

    I think so. Here is a row of my vcf: AB=0.0952381;ABP=32.8939;AC=1;AF=0.5;AN=2;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=7.35324;EPPR=4.03889;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5789;NS=1;NUMALT=1;ODD...

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    mons7re created a post,

    VariantFiltration Invalid Argument

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    Can you please provide a) GATK version used  4.1.4.1b) Exact GATK commands used c) The entire error log if applicable.   I have the following snakemake rule: rule gatk_filter:input:genome = "../../...

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    mons7re created a post,

    User error: input files reference and features have incompatible contigs

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    Can you please provide a) GATK version used b) Exact GATK commands used c) The entire error log if applicable.   Hello, I am very new to bioinformatics and I have a project to create a variant call...

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