Robert Butler
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Activity overview
Latest activity by Robert Butler-
Robert Butler commented,
The syntax in this is incorrect, a list of comma separated intervals will not work: `--intervals chr20,chr21` Instead, it seems like a list file is required?: https://gatk.broadinstitute.org/hc/en-...
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Robert Butler commented,
I updated to gatk4.1.4.1 and the command ran without issue.
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Robert Butler created a post,
Cannot get AddOrReplaceReadGroups to run
GATK version 4.0.12 Trying to merge several bams and run `HaplotypeCaller`, but that gives a `java.lang.IllegalArgumentException: samples cannot be empty` error. Ran `ValidateSamFile` and got the `...