Pedro Miguel Raposo
- Total activity 14
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 2
- Subscriptions 5
PostsRecent activity by Pedro Miguel Raposo Sort by recent activity
Create Somatic PON thresholdAnswered
Hello GATK Team, I have a simple question when it comes to creating a somatic PON. Under the 'CreateSomaticPanelOfNormals' description it says that "The tool takes multiple normal sample callsets p...
Custom made Panel of Normals required?
Hello, For what I understand, the GATK's best practices recommends the usage of a Panel of Normals (PON) for an accurate somatic mutation detection. By having a large enough pool of "normal" sample...
Sample intervals must be identical to the original intervals used to build the panel of normals
Hi. When I follow the CNV pipeline (https://gatkforums.broadinstitute.org/gatk/discussion/11682#2) I got the following error, whilst running the DenoiseReadCounts function: "Sample intervals must b...
java.lang.IllegalArgumentException: Records contained at least one interval that did not validate against the sequence dictionary.
Hello.Whilst counts coverage of paired end fragments, using the CollectReadCounts function (GATK v. 22.214.171.124), I got the following an error. It states: java.lang.IllegalArgumentException: Records co...