Jianying Li
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Activity overview
Latest activity by Jianying Li-
Jianying Li commented,
Thanks Genevieve! Here is the follow up question, in the help document the "intervel -L" is not required. But, when I issued for following command:gatk GenomicsDBImport -R /ddn/gs1/home/li11/proje...
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Jianying Li created a post,
GenomicsDBImport - why "intervals" is required??
AnsweredREQUIRED for all errors and issues: a) GATK version used: gatk-4.2.4.0 b) Exact command used: gatk GenomicsDBImport -R /ddn/gs1/home/li11/project2017/exomeSeq/SangerWG/GRCm38_68_ref/GRCm38_68.fa ...
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Jianying Li commented,
If there is anyway to "turn off the local realignment" in Mutect2 variant calling? Thanks.