gwct
- Total activity 3
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 1
Activity overview
Latest activity by gwct-
gwct commented,
Awesome, thanks! Were the variants at the sites not in the GVCF being added in erroneously? I ask so I can know if I need to re-run some things once the next release is out.
-
gwct created a post,
Some <NON_REF> alleles remain after GenotypeGVCFs when using --include-non-variant-sites
AnsweredCan you please provide a) GATK version used 4.1.4.1 b) Exact GATK commands used gatk GenotypeGVCFs -R ref/11-ref.fa -V 11.gvcf.gz -L "11" -O 11-all.vcf.gz --include-non-variant-sites gatk GenotypeG...