- Total activity 33
- Last activity
- Member since
- Following 1 user
- Followed by 0 users
- Votes 7
- Subscriptions 11
CommentsRecent activity by rohit satyam Sort by recent activity
Genevieve Brandt (she/her) The Dragmap aligner isn't working properly anymore and when issues are posted on GitHub they aren't being attended to lately. It's been 2 months now. Since DragMap is DRA...
Hi Anthony DiCi. It's been a month now. Is there any update from your team? Genevieve Brandt (she/her) Can you help me, please? I have long waited to get a "yes" or "np" reply to my query above.
Hi. I was wondering if the GATK team was able to find time to review this query. I read your support policy and my question seems to be in the lowest priority category. But we are planning to submi...
Hi Genevieve Brandt (she/her). Thanks for your input. We suspected something to be fishy with the demultiplexing step and it turns out to be true. We got it demultiplexed it again and now it works ...
Hi Genevieve Brandt (she/her) My BWA command ran successfully on 9 pairs of the data without any error. The new preprocessing pipeline of GATK as mentioned here and the one you mentioned should pr...
Hi, is there any update on the proper documentation of the Mitochondrial Variant Analysis. I am really finding it difficult to understand really what sequence of steps must be followed for finding ...
Hi Sir I have currently 23 Tumor vs Normal samples. According to GATK Best Practices, it is desirable if not necessary to include PONS as described here and here. My question is would PONS using 23...
Wow. Thanks a lot. David Benjamin
Hi David Benjamin Thanks for your prompt response. How about calling variants using different tools like DeepVariants, Mutect2, and Varscan and then intersecting the VCF files to rule out false pos...