Takuto Sato
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Activity overview
Latest activity by Takuto Sato-
Takuto Sato commented,
Hi Santiago, The read orientation filter was designed with the assumption that context-specific mutations (e.g. GCA -> GTA) that occur throughout the genome are not real and therefore should be fil...
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Takuto Sato commented,
Hi Maria, Thanks for reaching out. If all ref and alt reads are either F1R2 or F2R1 at every variant site, we have no way to separate real variants from the read orientation artifacts. In fact the ...
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Takuto Sato created an article,
Downsampling in GATK
By Takuto Sato, Computational Methods Team, Data Sciences Platform ________________________________________________________________________ In the 4.1.7.0 release of GATK, we added a new tool, Down...