
ThyagoLC
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Just to let others know that writing a script to run cpulimit on java worked. It controlled the cpu usage of all GATK tools invoked downstream by the workflow without problems. Thanks
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Genevieve Brandt (she/her), Thanks! Got it. So the problem is that other than STAR, those other Picard tools don't support multi-threading, so I can't pass multiple cpus in runtime section unlike l...
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Hi Samantha (she/her) I found out about the zippedStarReferences input later on, thank you! As for the second question, I'll leave my solution below so others may benefit from it: I used a custom ....