Jennifer Irving-McGrath
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Latest activity by Jennifer Irving-McGrath-
Jennifer Irving-McGrath commented,
Hi Bhanu, Thank you for your reply. However when i run Haplotype caller, I am getting a .g.vcf.gz as output as the example script details this: example script: gatk --java-options "-Xmx4g" Haploty...
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Jennifer Irving-McGrath commented,
Hi Bhanu Gandham , Thank you for your reply. The g.vcf files have their index files in the same directory. For example "3_335063_QUEEN.g.vcf.gz.tbi". Is it ok for them to be in this format or is th...
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Jennifer Irving-McGrath created a post,
genomicsDBImport .A USER ERROR has occurred: Failed to create reader from file
AnsweredGood afternoon. I am trying to import the below g.vcf's into a genomics DB before joint genotyping. I keep getting the following error and I would appreciate any help in solving it. I am new to GA...