Lait
- Total activity 7
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 3
Activity overview
Latest activity by Lait-
Lait created a post,
empty pon vcf file
AnsweredHi, I am creating a panel of normals from 50 normal samples. the final pon.vcf.gz file is completely empty. GATK version used: 4.2.2.0 command used for GenomicsDBImport: gatk GenomicsDBImport --ge...
-
Lait commented,
Thank you for your reply.Yes you are right, the process was aborted,I gave more resources, and ran the code on each chromosome separately (as you see in the -L option, I am using the V7 Agilent exa...
-
Lait created a post,
missing file: Callset.json , when creating PON
AnsweredIn the second step of creating a PON from 50 normal mutect calls, The processing goes well, no error reported, but one file is missing in the output directory: Callset.json a) GATK version used: 4....
-
Lait created a post,
VCF files never get annotated with PG tag for CalculateGenotypePosteriors
In our pipeline, we use GATK 3.8 on whole exome sequencing data consisting of Trios (mother, father and child). We process each sample alone (GVCF is not used and combined genotyping is not applied...