D B
- Total activity 21
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 3
- Subscriptions 4
Posts
Recent activity by D B Sort by recent activity-
Mutect2 - somatic variant calling with/without matched normal sample
a) GATK version used v4.1.4.1 b) Exact GATK commands used Mutect2 w/ matching normal gatk Mutect2 -R hg38.fa \-I input_tumor.bam -I input_normal.bam \-tumor tumor_sample -normal normal_sample \-pon...
-
Filtering somatic calls from tumor-only variant calling
[GATK version used - v4.1.4.1] Hello, I have germline and somatic variants called using HaplotypeCaller and Mutect2. As you can see from the title of the posting, it was done using tumor samples wi...
-
Mutect2 - Need one or two reads to construct a fragment
The command I used below is able to generate the .vcf output along with its index and stats file, but my snakemake run fails to complete due to exit status (3 instead of 0). I wonder if below error...