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Chadi Saad

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  • Total activity 9
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  • Call germline mutations from Mutect2

    1. Community
    2. Somatic

    Is it possible to call germline mutations with Mutect2 (in addition to somatic variants) ? Because I read on the net, that the algorithm of Mutect2 will eliminate germline variants and I have to us...

    • Chadi Saad
    • 3 followers
    • 3 comments
    • 1 vote

  • dbSNP version for GATK best practices pipeline

    1. Community
    2. Germline

    The GATK data resources bundle for gatk best practices contains dbsnp ver 138. Is it possible to use an updated version (like v151) for bqsr & vqsr ? or it is recommended to use the same version as...

    • Chadi Saad
    • 2 followers
    • 4 comments
    • 0 votes