Mark Godek
- Total activity 21
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 5
Posts
Recent activity by Mark Godek Sort by recent activity-
SelectVariants JEXL expression works in somatic matched pair but not germline cohort
Running on one of the matched pairs used in this cohort (command below) works fine. When I run it on the jointcalled cohort, it creates the filtered VCF and index file, but produces an error. Do I ...
-
Funcotator cannot complete funcotaion for variant due to alternate allele
AnsweredI'm attempting to annotate germline variants after VQSR with Funcotator using GATK 4.1.4.1. GATK command is: gatk Funcotator \-R ${REFERENCE_GENOME} \-V ${OUT}/germline.filtered.vcf.gz \-O ${OUT}/a...