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David Gómez-Sánchez

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Latest activity by David Gómez-Sánchez
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    David Gómez-Sánchez commented,

    Hi Derek. When typing "java --version" on the console I get this: openjdk 11.0.5 2019-10-15OpenJDK Runtime Environment (build 11.0.5+10-post-Ubuntu-0ubuntu1.118.04)OpenJDK 64-Bit Server VM (build 1...

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    David Gómez-Sánchez commented,

    Sorry, exact command was: gatk MarkDuplicatesSpark -I 1.bam -O MD_Spark_1.bam  

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    David Gómez-Sánchez created a post,

    MarkDuplicatesSpark crash

    Hello, I am getting this error (after ValidateSamFile was ok) when running gatk MarkDuplicatesSpark -I file.bam -O spark.bam on GATK version 4.1.4.1 java.lang.IllegalArgumentException: Unsupported ...