ikeoluwao_o
- Total activity 20
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 1
- Subscriptions 6
Posts
Recent activity by ikeoluwao_o Sort by recent activity-
Best Google Cloud Platform workflow for FASTQ to multi-sample VCF
I would like to run 150 WGS samples through the GATK Best Practices workflow on Google Cloud Platform and have found that many of the workflows are optimized for hg38. Is there a way to use b37 ins...
-
Error on Google Cloud Platform: Failed to evaluate 'gvcf_paths' in Joint Genotyping
I'm running gatk-workflows/gatk4-germline-snps-indels on the Google Cloud platform. I'm implementing the JointGenotyping.wdl on 50 exome GVCF files from a Sentieon DNAseq_DNAscope run. I edited the...
-
Error on Google Cloud Platform: Joint GenotypingWf interval file is larger than 128000 Bytes
Deciding to continue to the Joint Genotyping workflow from the Running GATK Best Practices Google tutorial, I came across the error below. The error has been addressed in a previous issue. The solu...
-
Error on Google Cloud Platform: haplotypecaller-gvcf-gatk.wdl with make_gvcf = false
The gatk-workflows/gatk4-germline-snps-indels GitHub README says "However, for instances when calling variants for one or a few samples it is possible to have the workflow directly call variants an...
-
REPOST - GenomeSTRiP error: partition.genotypes.map.dat file missing at Stage 12
NOTE: This question was previously posted to the old forum and was acknowledged as received and under review by support staff. The error below was generated in CNVDiscoveryStage12 of my Snakemake...