Jing Yu
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Activity overview
Latest activity by Jing Yu-
Jing Yu commented,
The first example `--tmp-dir=xxx` should be `--tmp-dir xxx`
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Jing Yu commented,
Hi Bhanu Gandham, Thank you for your anwer and also the ticket. Looking forward to seeing this getting addressed.
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Jing Yu commented,
Hi Bhanu Gandham, I've tried the first approach and it was error-prone. My frist post illustrated this. Basically, some of the INFO field in the subsetted single-sample gVCF will inherit values fro...
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Jing Yu commented,
Hi Bhanu Gandham, I don't think GenomicsDBImport can take multi-sample GVCFs. The article you cited used GenomicsDBImport to import single-sample GVCFs.
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Jing Yu commented,
Hi Bhanu Gandham Thank you for your reply. What I'm trying to ask is slightly different: Is there a way to convert a multi-sample gvcf (created by CombineGVCFs) to a GenomicsDB?
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Jing Yu commented,
Hello, Any update on this?
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Jing Yu commented,
Thank you Bhanu. The reason why I wanted to do such conversions is a bit exceptional. I have some multi-sample GVCFs from many years ago, with their bams hard-to-trace and their single-sample GVCFs...
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Jing Yu created a post,
Convert combineGVCF result to GenomicsDB [Repost]
AnsweredThe link to the previous post is here: https://gatk.broadinstitute.org/hc/en-us/community/posts/360056199612-Convert-combinedGVCF-to-GenomicsDB?input_string=Convert%20combineGVCF%20result%20to...
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Jing Yu created a post,
Convert combinedGVCF to GenomicsDB
Hello, I've posted this question in the old forum with no response, so I'm posting here again. I have legacy CombinedGVCF files from long time ago, and the gVCF files for each individual are no lon...