riederd
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Latest activity by riederd-
riederd created a post,
FilterByOrientationBias vanished in 4.1.6.0
Hi, I just tried out the new version 4.1.6.0 for our pipeline, however it seems that there is missing the 'FilterByOrientationBias' tool. So it breaks our pipeline: A USER ERROR has occurred: 'Filt...
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riederd commented,
I'd suggest, that the GATK developers update the gatkcondaenv.yml to include the newer version of numpy. Best Dietmar
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riederd commented,
Official comment Hi Beri, this fixed the problem, partly.I created the conda env with the yml file bundled with the gatk zip file, and activated the env: $ conda env create -f gatkcondaenv.yml -p /path/to/myGATK_en...
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riederd commented,
Unfortunately no. Best
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riederd commented,
Hi Beri, I get the same error with v4.1.3.0
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riederd created a post,
CNNScoreVariants carshes with java.lang.NullPointerException
AnsweredCNNScoreVariants carshes with java.lang.NullPointerException Can you please provide a) GATK version used v4.1.4.1 b) Exact GATK commands used /usr/local/bioinf/gatk/latest4/gatk CNNScoreVariants ...