Derek Caetano-Anolles
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Recent activity by Derek Caetano-Anolles Sort by recent activity-
Thank you for your input, SAMUEL ANDREW ~ As you know, you can still determine the missing genotypes because the FORMAT DP will be 0 even within the current GenotypeGVCFs format. So it is still pos...
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Eddy W - By default the VCF files will not recognize those variant sites as missing genotype. This would require converting the GenotypeGVCFs output to a format that PLINK will recognize, by replac...
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Felipe Batalini Good catch. The video link has been updated. Thanks for bringing it to my attention!
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Great! I'm glad it worked out. Don't hesitate to come back with more questions if you have GATK-related trouble further on down the line.
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Hi samuel Welcome to using GATK! I hope that we can help get your pipeline sorted out and functioning. To start off with, your input command appears to be using `-conf` instead of the `--conf` opt...
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Hi again Takeshi Yoshimura, Thanks for the recommendation! I've just updated the document now.
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I agree, Eric C. Anderson! I think it's good to have this info accessible somewhere that Google (or our site's search bar) can easily find it. Also — thank you for inspiring this post with your com...
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Official comment Hi Takeshi Yoshimura, I am the writer responsible for those documents. Thank you very much for your interest in helping us improve our documentation! Those two articles are actually in serious need...
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It's pronounced GATK, using the same sound as in GIF. Hope that clears it up for you, Bob Chen!
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Fantastic, I'm glad it was an easy fix. Best of luck with your project!