Avatar

Derek Caetano-Anolles

  • Total activity 335
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 3 users
  • Votes 79
  • Subscriptions 47

Activity overview

Latest activity by Derek Caetano-Anolles
  • Avatar

    Derek Caetano-Anolles created an article,

    ⚙️ GATK 4.3 release

    The latest GATK release came out a few weeks ago, with changes corresponding to the period of April 13, 2022 - October 13, 2022. This update brings a ton of new tools to GATK, and we highly recomm...

  • Avatar

    Derek Caetano-Anolles created an article,

    Introducing NVIDIA's NVScoreVariants, a new deep learning tool for filtering variants

    If you know only one thing about NVIDIA, it's probably that they manufacture popular graphics cards for computers. They started out targeting hardware to gaming machines, branding themselves as “t...

  • Avatar

    Derek Caetano-Anolles created an article,

    🗓️ DRAGEN-GATK Webinar [Oct. 21, 2022]

    This October 21, join us for an interactive online workshop on Whole-Genome Analysis with DRAGEN-GATK! In this webinar, you will get the opportunity to will learn what it is, why it exists, and ho...

  • Avatar

    Derek Caetano-Anolles created an article,

    GATK Best Practices for Structural Variation Discovery on Single Samples

    GATK-SV is a structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Before you begin processing, please read the full pipeline documentation available ...

  • Avatar

    Derek Caetano-Anolles created an article,

    Structural Variants

    Structural variants are key players in human evolution and disease, but they are difficult to discover and analyze. There are many tools out there to discover structural variants; some algorithms a...

  • Avatar

    Derek Caetano-Anolles created an article,

    Structural variant (SV) discovery

    In this article, you'll learn how to identify structural variants in one or more individuals to produce a callset in VCF format. Structural variants (SVs) are DNA rearrangements that involve at ...

  • Avatar

    Derek Caetano-Anolles created an article,

    Hacking GATK to reduce your cloud costs

    When it comes to research, time is money. And that couldn't be any more literal than when you're accessing data out of the cloud. Every additional kilobyte of data that your tools need to download ...

  • Avatar

    Derek Caetano-Anolles commented,

    Great! I'm glad it worked out. Don't hesitate to come back with more questions if you have GATK-related trouble further on down the line.

  • Avatar

    Derek Caetano-Anolles commented,

    Hi samuel  Welcome to using GATK! I hope that we can help get your pipeline sorted out and functioning. To start off with, your input command appears to be using `-conf` instead of the `--conf` opt...

  • Avatar

    Derek Caetano-Anolles commented,

    Hi again Takeshi Yoshimura,  Thanks for the recommendation! I've just updated the document now.