Derek Caetano-Anolles
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Activity overview
Latest activity by Derek Caetano-Anolles-
Derek Caetano-Anolles created an article,
⚙️ GATK 4.3 release
The latest GATK release came out a few weeks ago, with changes corresponding to the period of April 13, 2022 - October 13, 2022. This update brings a ton of new tools to GATK, and we highly recomm...
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Derek Caetano-Anolles created an article,
Introducing NVIDIA's NVScoreVariants, a new deep learning tool for filtering variants
If you know only one thing about NVIDIA, it's probably that they manufacture popular graphics cards for computers. They started out targeting hardware to gaming machines, branding themselves as “t...
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Derek Caetano-Anolles created an article,
🗓️ DRAGEN-GATK Webinar [Oct. 21, 2022]
This October 21, join us for an interactive online workshop on Whole-Genome Analysis with DRAGEN-GATK! In this webinar, you will get the opportunity to will learn what it is, why it exists, and ho...
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Derek Caetano-Anolles created an article,
GATK Best Practices for Structural Variation Discovery on Single Samples
GATK-SV is a structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Before you begin processing, please read the full pipeline documentation available ...
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Derek Caetano-Anolles created an article,
Structural Variants
Structural variants are key players in human evolution and disease, but they are difficult to discover and analyze. There are many tools out there to discover structural variants; some algorithms a...
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Derek Caetano-Anolles created an article,
Structural variant (SV) discovery
In this article, you'll learn how to identify structural variants in one or more individuals to produce a callset in VCF format. Structural variants (SVs) are DNA rearrangements that involve at ...
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Derek Caetano-Anolles created an article,
Hacking GATK to reduce your cloud costs
When it comes to research, time is money. And that couldn't be any more literal than when you're accessing data out of the cloud. Every additional kilobyte of data that your tools need to download ...
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Derek Caetano-Anolles commented,
Great! I'm glad it worked out. Don't hesitate to come back with more questions if you have GATK-related trouble further on down the line.
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Derek Caetano-Anolles commented,
Hi samuel Welcome to using GATK! I hope that we can help get your pipeline sorted out and functioning. To start off with, your input command appears to be using `-conf` instead of the `--conf` opt...
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Derek Caetano-Anolles commented,
Hi again Takeshi Yoshimura, Thanks for the recommendation! I've just updated the document now.