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Recent activity by rcorbett Sort by recent activity Recent activity Votes
  • GATK-DRAGEN standalone pipeline?


    Hi folks, I have been asked to try out your GATK-dragen pipeline.   I found this and related pages: https://gatk.broadinstitute.org/hc/en-us/articles/4411716682011-Full-release-of-open-source-DRAGE...

  • CollectRnaSeqMetrics GL000220 test not counting ribosomal reads


    If you are seeing an error, please provide(REQUIRED) : a) GATK version used: gatk- b) Exact command used: gatk- CollectRnaSeqMetrics -I A56781.STAR.genome.sorted.bam.dup.bam.chrU...

  • filterSamReads stdout format error

    Hi there, I am seeing some differences between the /dev/stdout and -O output.bam output formats for filterSamReads. GATK version:   gatk- Command 1: gatk- FilterSamReads -I inp...