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Latest activity by bsmith030465
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    bsmith030465 commented,

    Bhanu, I will try the newer version of haplotype caller. Meanwhile, is there a way that ValidateVariants makes a list of all variants that fail in a vcf file? Currently, it appears to exit as soon ...

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    bsmith030465 created a post,

    GATK4: RNAseq short variant discovery (SNPs + Indels)

    Hi, I am using GATK4 (4.1.3) for "RNAseq short variant discovery (SNPs + Indels)" as given at GATK best practices workflows at: https://gatk.broadinstitute.org/hc/en-us/articles/360035531192-RNAseq...