lmose
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Latest activity by lmose-
lmose commented,
Thanks. That script appears to just remove the non-AF fields.
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lmose commented,
The Gnomad datasets are provided for exomes and genomes separately with AF computed separately for each. My understanding is that af-only-gnomad.hg38.vcf.gz includes both genome and exome data and...
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lmose commented,
Hi Genevieve, Thanks for responding. Yes, I spent time looking at the various threads including the one you mentioned. I could not find the specific details in any of them or in the FAQ. My apol...
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lmose commented,
Additionally, there are non_cancer allele counts in the Gnomad files which I believe exclude cancer samples. Do we know if these samples are included in the af-only-gnomad.hg38.vcf.gz AF?
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lmose created a post,
af-only-gnomad.hg38.vcf.gz details
Hello, Are there details available about how exactly af-only-gnomad.hg38.vcf.gz was created? I've seen elsewhere that it was generated from one of the Gnomad v2 versions (not sure which exactly) a...