sahuno
cancer genomics @Polak lab; cell-free DNA, mutational signatures, cell of origin
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Votes on activity by sahuno Sort by votes-
Genevieve Brandt (she/her) No please, the samples may have been mislabeled. can I tell from the reads or something if this is likely to be tumor or normal? -S
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Hi jejacobs23 you need the `gsutil` (google cloud command line software) to able to download google cloud objects. to install `gsutil` see here https://cloud.google.com/storage/docs/gsutil_install ...
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Samantha (she/her) Great! thanks for pointing this out! Sam
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Hi Samantha (she/her) I appreciate your time looking at the workflow and logs. You are right about conflicts in gatk docker versions in workflow and as attribute I specified. but i I don't think a...
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Hi Samantha (she/her) I've added ` GROUP_FireCloud-Support@firecloud.org ` to the current workspace and sent submission details to email. could you please confirm you have it? Kind regards SA
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Genevieve Brandt (she/her) thanks! that was helpful! SA
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Elizabeth237 1. gnomad resources for hg38 can be found in funcotator google bucket https://storage.cloud.google.com/broad-public-datasets/funcotator/gnomAD_2.1_VCF_INFO_AF_Only/hg38/ There are two...
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Hi Jason Cerrato i just did. thanks Sam
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Hi Jason Cerrato . yes please, that's the right workspace and sub id. many thanks S
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Hi Bhanu Gandham how can i resolve these warnings? thanks for the response