Thandeka
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Genome STRiP CNV Discovery pipeline error
If you are seeing an error, please provide(REQUIRED) : a) Genome STRiP version used: 2.00.1958b) Exact command used: #run cnv discoveryjava -cp ${classpath} ${mx} \org.broadinstitute.gatk.queue.QCo...
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GenomeSTRiP analysis error
If you are seeing an error, please provide(REQUIRED) : a) GenomeSTRiP version 2.00.1958 ##### ERROR stack trace org.broadinstitute.sv.commandline.ArgumentException: Unrecognized gender for sample E...
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GenomeSTRiP analysis
If not an error, choose a category for your question(REQUIRED):a) Will using GenomeSTRiP to analyze different datasets in terms of coverage, read-base pairs, PCR vs PCR-free, affect the results I w...
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GenomeSTRiP CNVDiscovery error
hi I have been trying to run CNVDiscovery but I keep on getting the following error, I have no problem with running discovery, preprocess, and genotyping scripts. here is the error message that I g...
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CNV Discovery pipeline error
Hi, I have been trying to run GenomeSTRiP CNV discovery pipeline but I keep on getting the same error, I have no idea what is going on I hope that you will be able to assist. whats amusing is that ...
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GenomeSTRiP SVGenotyping script and alt allele alignment
Hi I'm trying to run GenomeSTRiP using cram files, I opted on using the installtest scripts that come with the GenomeSTRiP package. I have modified it to suit my dataset. The discovery.sh script ru...
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Installation of GenomeSTRiP on slurm
Good afternoon, My colleagues and I have been trying to install GenomeSTRiP on slurm, when we do the test run we in counter the following error: Error occurred during initialization of VM Unable t...