• Total activity 31
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 1
  • Subscriptions 9


Recent activity by Thandeka Sort by recent activity Recent activity Votes
  • Genome STRiP CNV Discovery pipeline error

    If you are seeing an error, please provide(REQUIRED) : a) Genome STRiP version used: 2.00.1958b) Exact command used: #run cnv discoveryjava -cp ${classpath} ${mx} \org.broadinstitute.gatk.queue.QCo...

  • GenomeSTRiP analysis error

    If you are seeing an error, please provide(REQUIRED) : a) GenomeSTRiP version 2.00.1958 ##### ERROR stack trace org.broadinstitute.sv.commandline.ArgumentException: Unrecognized gender for sample E...

  • GenomeSTRiP analysis

    If not an error, choose a category for your question(REQUIRED):a) Will using GenomeSTRiP to analyze different datasets in terms of coverage, read-base pairs, PCR vs PCR-free, affect the results I w...

  • GenomeSTRiP CNVDiscovery error

    hi I have been trying to run CNVDiscovery but I keep on getting the following error, I have no problem with running discovery, preprocess, and genotyping scripts. here is the error message that I g...

  • CNV Discovery pipeline error

    Hi, I have been trying to run GenomeSTRiP CNV discovery pipeline but I keep on getting the same error, I have no idea what is going on I hope that you will be able to assist. whats amusing is that ...

  • GenomeSTRiP SVGenotyping script and alt allele alignment

    Hi I'm trying to run GenomeSTRiP using cram files, I opted on using the installtest scripts that come with the GenomeSTRiP package. I have modified it to suit my dataset. The discovery.sh script ru...

  • Installation of GenomeSTRiP on slurm

    Good afternoon, My colleagues and I have been trying to install GenomeSTRiP on slurm, when we do the test run we in counter the following error:  Error occurred during initialization of VM Unable t...