Thandeka
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Recent activity by Thandeka Sort by recent activity-
@Bob thank you let me download it again and run the script
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I don't think I quite understand what you mean. I used the above commands and this was the output: $ ls -l Homo_sapiens_assembly38.lcmask.fasta-r--r--r-- 1 marhwayiza cbio-group 793259520 Jul 10 16...
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Bob Handsaker thank you very much, I think using the sample_gender.report.txt produced by preprocessing is the best option
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I did not have any specific reason, I think the best way would be to use the sample_gender.report.txt because I thought its a requirement to have a gender map file. It does not have a header, its a...
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The issue is with the highlighted sample (ERR1955423). I have attached an image of the gender map file. and also posted a part of the file. I'm doing an analysis of over 200 samples. 190618_FD0925...
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Bob Handsaker thank you for the response, this has really helped me.
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Hi Bob the, -jobWrapper argument worked I am no longer getting errors, but the only problem I have now is that in the output directory there is nothing and when I open the log directory and read it...
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Thank you very much Bob. Let me work on these suggestions and hopefully, it will work out.
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Hi Bob, my apologies for writing something with missing information, yes i am running on a DRMAA on a cluster that uses SLURM. This might be a tedious question but, what is the -jobWrapperScript a...
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Hi, Bhanu thank you also thank you, Bob, in advance, I hope I will get the query sorted.