Thandeka
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Activity overview
Latest activity by Thandeka-
Thandeka commented,
Hi Bob the, -jobWrapper argument worked I am no longer getting errors, but the only problem I have now is that in the output directory there is nothing and when I open the log directory and read it...
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Thandeka commented,
Thank you very much Bob. Let me work on these suggestions and hopefully, it will work out.
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Thandeka commented,
Hi Bob, my apologies for writing something with missing information, yes i am running on a DRMAA on a cluster that uses SLURM. This might be a tedious question but, what is the -jobWrapperScript a...
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Thandeka commented,
Hi, Bhanu thank you also thank you, Bob, in advance, I hope I will get the query sorted.
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Thandeka created a post,
GenomeSTRiP CNVDiscovery error
hi I have been trying to run CNVDiscovery but I keep on getting the following error, I have no problem with running discovery, preprocess, and genotyping scripts. here is the error message that I g...
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Thandeka created a post,
CNV Discovery pipeline error
Hi, I have been trying to run GenomeSTRiP CNV discovery pipeline but I keep on getting the same error, I have no idea what is going on I hope that you will be able to assist. whats amusing is that ...
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Thandeka commented,
Hi Bob, thank you for the response, I'm sorry but what is WDLs? will WDLs also help me with the CNVDiscovery?
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Thandeka created a post,
GenomeSTRiP SVGenotyping script and alt allele alignment
Hi I'm trying to run GenomeSTRiP using cram files, I opted on using the installtest scripts that come with the GenomeSTRiP package. I have modified it to suit my dataset. The discovery.sh script ru...
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Thandeka commented,
Thank you Bob
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Thandeka commented,
Thank you, Bob Handsaker, Which java version is more compatible with Genome STRiP? We want to do a CNV analysis using whole-genome sequencing data. The platform/cluster that we using runs on slurm.