Eduardo Maury
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Activity overview
Latest activity by Eduardo Maury-
Eduardo Maury commented,
it seems that it worked!
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Eduardo Maury commented,
Still an error: workspace-id: b266996d-0c10-45f7-bd1c-39cb4eef6aa5submission-id: d4687ece-dac4-4b13-98de-bdc4bc2fb5d3
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Eduardo Maury commented,
Still with error. I don't think we are able to allocate 800GB for a tast on terra. workspace-id: b266996d-0c10-45f7-bd1c-39cb4eef6aa5submission-id: f4a815ce-e540-470a-839e-431848993ef4
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Eduardo Maury commented,
Not sure which recommendation specific you are referring to since we tried many on the comment linked. Which one are you referring to?
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Eduardo Maury commented,
So with the new specifications one of the samples ran to completion. However, there is still an error with one of the samples, although now it is able to pass the markduplicates step. workspace-...
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Eduardo Maury commented,
Currently trying to run with these parameters. I have mentioned this in the past, but in the short term is there a pipeline that could just get me the bwa aligned bams? I really just need to re-ali...
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Eduardo Maury commented,
Is the question above addressed to me?
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Eduardo Maury commented,
Still with errors using inflater/deflater workspace-id: b266996d-0c10-45f7-bd1c-39cb4eef6aa5submission-id: 23aed5a9-2cb0-403e-b1d9-db351e2c02f3
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Eduardo Maury commented,
That is correct. I just re-ran with the correct version and disabling snappy. There is still an error. Here is the run information: workspace-id: b266996d-0c10-45f7-bd1c-39cb4eef6aa5submission-id:...
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Eduardo Maury commented,
The WDL error would have been caught by the compiler that stores the WDL scripts as it runs proper formatting. This error has not been reported on previous times I ran the code. Not sure what the e...