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ajwils

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Latest activity by ajwils
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    ajwils commented,

    rohit satyam and Genevieve Brandt To be clear, all my command line pipe does is a single alignment equitable version of the Mutect2, FilterMutectCalls, and VariantFiltration steps, using the same a...

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    ajwils commented,

    Kat No The best way to counter NuMTs when you're not doing WGS work is to take steps to isolate your mtDNA at the wet lab stage (long distance amplicons encompassing multiple mtDNA genes, specializ...

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    ajwils commented,

    Tiffany Miller Thanks for the response! I'm really glad you found an accomplished docs writer.  I've been doing most of my early testing on the Terra workspace, yes, but I'm really looking into loc...

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    ajwils commented,

    Geraldine Van der Auwera Off the top of my head: attachments, although in the meantime we can certainly just hyperlink to a filehoster block quotes indentation control code blocks

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    ajwils created a post,

    GATK Best Practices Mitochondrial Analysis

    I expect everything is a bit touch and go at the moment with the site migration, and that things will be rolled out slowly in batches, but when/if you do put together an official Best Practices for...

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    ajwils commented,

    Geraldine Van der Auwera I fully respect the choice to trim down, despite being apprehensive about potential lost content. If you're all really prepared to painstakingly port over vast amounts of i...

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    ajwils commented,

    Geraldine Van der Auwera I suppose I am saying that: A) The announcement threads themselves should be migrated over as is, as they are a great informational resource for the newer features. This sh...

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    ajwils commented,

    It would be really good if you guys could find a way to port over the old announcement threads that talked about new features.   For example, the discussion going on in this thread: https://gatkfor...