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REQUIRED for all errors and issues: a) GATK version used:GATK4.2.2b) Exact command used: VariantRecalibrator --resourcec) Entire program log: I noticed that the ExAC runner the VQSR with Axiom_Exom...

• lizhichao
• August 11, 2022 01:49
• 2 followers
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2. Documentation Questions

REQUIRED for all errors and issues: a) GATK version used:gatk-4.1.7 b) Exact command used:/zfssz2/ST_MCHRI/BIGDATA/USER/liupanhong/Src/gatk-4.1.7.0/gatk --java-options -Xmx3G GenotypeConcordance \-...

• lizhichao
• February 17, 2022 09:09
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2. General Discussion

If you are seeing an error, please provide(REQUIRED) : a) GATK version used: b) Exact command used: c) Entire error log: If not an error, choose a category for your question(REQUIRED):b) What does ...

• lizhichao
• January 19, 2022 04:17
• 2 followers
• 4 comments
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2. General Discussion

If you are seeing an error, please provide(REQUIRED) : a) GATK version used:GATK 4.1.2b) Exact command used: GATK GenotypeGVCFs --sample-ploidy c) Entire error log: If not an error, choose a catego...

• lizhichao
• January 19, 2022 04:06
• 2 followers
• 2 comments
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2. Germline

When I run Genomestrip CNVdiscovery in cluster(SGE),I can run with SGE config: -jobRunner Drmaa  But ,i met error :ERROR 15:04:42,660 Retry - Caught error during attempt 3 of 4.org.broadinstitute.g...

• lizhichao
• August 10, 2020 08:16
• 2 followers
• 11 comments
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