
Layne Sadler
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Activity overview
Latest activity by Layne Sadler-
Layne Sadler created a post,
Do GATK tools support Apple silicon?
I need to purchase a new laptop. I want to upgrade to a many-cored Mac with the new Apple silicon chips for parallelism, speed, and reduced power consumption. This is especially attractive for vari...
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Layne Sadler commented,
Does HaplotypeCaller support Apple silicon?https://www.biostars.org/p/478429/#495387
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Layne Sadler commented,
Here is a table comparing Funcotator to VEP variant classifications. It's not completely 1-1 as some of the high/moderate are missing. https://docs.google.com/document/d/1Xplvq-6wNUKQWUN7hsNPu_TFdy...
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Layne Sadler commented,
Agreed that the annotations should have their own page to be more searchable
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Layne Sadler commented,
So I got this running (hope it finishes) after a few hours of troubleshooting. It would be nice to have links to information about upstream steps like generating the supplemental files like the fas...
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Layne Sadler commented,
The page in this error message does not exist """A USER ERROR has occurred: Fasta index file ... Please see http://gatkforums.broadinstitute.org/discussion/1601/how-can-i-prepare-a-fasta-file-to-us...
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Layne Sadler commented,
Error while following the annotation example verbatim:`A USER ERROR has occurred: Unrecognized annotation group name: Standard`
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Layne Sadler commented,
Reference for HaplotypeCaller commands:https://gatk.broadinstitute.org/hc/en-us/articles/360042913231-HaplotypeCaller Prior that, the GATK subtools are found via `gatk -h` SortSam (Picard) = Sorts...