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Aziz

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Recent activity by Aziz Sort by recent activity Recent activity Votes

  • HaplotypeCaller does not work

    Answered
    1. Community
    2. Special GATK Use Cases

    REQUIRED for all errors and issues: Due to MODULEPATH changes, the following have been reloaded:  1) ImageMagick/7     7) gnuplot/4         13) pcre/8.38              19) tidyp/1.04  2) R/3.4.2    ...

    • Aziz
    • 2 followers
    • 2 comments
    • 0 votes

  • combine GVCF

    Answered
    1. Community
    2. Special GATK Use Cases

    REQUIRED for all errors and issues: a) GATK version used: ml biocontainers gatk4/4.2.5.0 b) Exact command used: gatk CombineGVCFs \-R persian_walnut_junglans_regia_chrs_sept18.fasta \--variant SRR1...

    • Aziz
    • 2 followers
    • 2 comments
    • 0 votes

  • GVCF

    1. Community
    2. Special GATK Use Cases

    REQUIRED for all errors and issues: a) GATK version used: module load GATK/3.6.0 b) Exact command used: GenomeAnalysisTK -nt 8 -T GenotypeGVCFs \-R persian_walnut_junglans_regia_chrs_sept18.fasta \...

    • Aziz
    • 2 followers
    • 1 comment
    • 0 votes