Aziz
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Activity overview
Latest activity by Aziz-
Aziz created a post,
HaplotypeCaller does not work
AnsweredREQUIRED for all errors and issues: Due to MODULEPATH changes, the following have been reloaded: 1) ImageMagick/7 7) gnuplot/4 13) pcre/8.38 19) tidyp/1.04 2) R/3.4.2 ...
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Aziz commented,
Hello, I used GAYK/ 3 to combine multiple vcf files in the past, but it is no longer working. GenomeAnalysisTK -at 8 -T GenotypeGVCFs Now, I tried to use this command to combine multiple vcf files...
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Aziz created a post,
combine GVCF
AnsweredREQUIRED for all errors and issues: a) GATK version used: ml biocontainers gatk4/4.2.5.0 b) Exact command used: gatk CombineGVCFs \-R persian_walnut_junglans_regia_chrs_sept18.fasta \--variant SRR1...
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Aziz created a post,
GVCF
REQUIRED for all errors and issues: a) GATK version used: module load GATK/3.6.0 b) Exact command used: GenomeAnalysisTK -nt 8 -T GenotypeGVCFs \-R persian_walnut_junglans_regia_chrs_sept18.fasta \...
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Aziz commented,
Hi Genevieve, I want to generate vcf files from several bam files. I got this error. Would you please let me know how to fix this problem. htsjdk.samtools.SAMFormatException: Invalid GZIP header ...