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Romanos Sklavenitis Pistofidis

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Latest activity by Romanos Sklavenitis Pistofidis
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    Romanos Sklavenitis Pistofidis commented,

    Adding more results here for troubleshooting:  I used the Custom 700 PoN with the GATK3 workflow and no hypersegmentation was observed (Plot #3, produced by Absolute off of AllelicCapseg output).

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    Romanos Sklavenitis Pistofidis commented,

    Hi Sam,  "Before" and "After were not appropriate titles for the plots above. "Before" was produced with the old workflow used by the CGA WES pipeline and a 1000G PoN, while "After" was produced wi...

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    Romanos Sklavenitis Pistofidis created a post,

    Somatic CNV hypersegmentation introduced by PoN

    Hello, I have used this workflow on FireCloud (github.com/gatk-workflows/gatk4-somatic-cnvs/cnv_somatic_pair_workflow & us.gcr.io/broad-gatk/gatk:4.1.0.0) on Tumor-Normal exomes with a custom PoN m...