Robert Bremel
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Recent activity by Robert Bremel Sort by recent activity-
I don't think that is possible with Docker version. With docker the a set of genome and exome resources are maintained locally and then google is queried as things progress.
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Funcotator seems to have been broken now for a day and half.
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Also have a problem with funcotator. Error indicates that it is the same problem as 2 months ago in above post
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headers are too big to insert here. One from the resources @ google resources_broad_hg38_v0_1000G.phase3.integrated.sites_only.no_MATCHED_REV.hg38.vcf the other one I created a week or so ago with...
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I just had the same type of problems with one of the hg38 resources resources_broad_hg38_v0_1000G.phase3.integrated.sites_only.no_MATCHED_REV.hg38.vcf I used the alternative hg38 dbsnp resource an...
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Thanks!
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Hi, What exactly is a "known edge case"? I've used 1.7 for quite a while without problems. The link given on the resource-bundle site does not have 1.8. The link seems to date to 2016? I got 1....
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The problem is that I can not figure out what line is the problem. chr12 98601528 is the last line in the funcotator .maf. Funcotator seems to grab a number of lines at a time while it is workin...
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./gatk BuildBamIndex --INPUT fname.bam
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I had a similar?? issue crop up with BuildBamIndex in the docker 4.3.0.0 version on Windows 10 with WSL2 and DockerDesktop BuildBamIndex is supposed to only need a --INPUT argument. It runs and ...