Robert Bremel
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Activity overview
Latest activity by Robert Bremel-
Robert Bremel commented,
This seems to be caused by the gnomAD buckets. Using the v1.8 funcotator_datasources all the other annotations except gnomAD appear to run without error in Docker. Including the genomic or somati...
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Robert Bremel created a post,
Funcotator Problem docker image code:400 message: Bucket is a requester pays bucket but no user project provided.
REQUIRED for all errors and issues: a) GATK version used: b) Exact command used: c) Entire program log: It has been down with this problem all week. It had the same problem in February and was fi...
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Robert Bremel commented,
I don't think that is possible with Docker version. With docker the a set of genome and exome resources are maintained locally and then google is queried as things progress.
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Robert Bremel commented,
Funcotator seems to have been broken now for a day and half.
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Robert Bremel commented,
Also have a problem with funcotator. Error indicates that it is the same problem as 2 months ago in above post
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Robert Bremel commented,
headers are too big to insert here. One from the resources @ google resources_broad_hg38_v0_1000G.phase3.integrated.sites_only.no_MATCHED_REV.hg38.vcf the other one I created a week or so ago with...
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Robert Bremel commented,
I just had the same type of problems with one of the hg38 resources resources_broad_hg38_v0_1000G.phase3.integrated.sites_only.no_MATCHED_REV.hg38.vcf I used the alternative hg38 dbsnp resource an...
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Robert Bremel commented,
Thanks!
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Robert Bremel created a post,
FuncotatorDataSourceDownloader problem at google
Had a problem with Funcotator yesterday thought maybe the datasources had been corrupted so tried to download new set. Got same error docker version 4.6.1.0 = docker "latest" code: 400mes...
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Robert Bremel created a post,
Funcotator Problem docker image code:400
Have been using this syntax for 4-5 yrs. Worked a week ago? (gatk) root@927aafec98f5:/gatk# ./gatk Funcotator --versionUsing GATK jar /gatk/gatk-package-4.4.0.0-local.jarRunning: java -Dsamj...