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Hanbing Song

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Latest activity by Hanbing Song
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    Hanbing Song commented,

    1. Community
    2. Somatic
    3. Incorrect Annotation from Funcotator

    Ah, got it! Thanks!   

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    Hanbing Song commented,

    1. Community
    2. Somatic
    3. Incorrect Annotation from Funcotator

    Thank you, Genevieve, for your response!  Yeah, I saw the other post before but since the gatk I am using now is curated by our computational cluster so I don't think I have enough permission to up...

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    Hanbing Song created a post,

    Incorrect Annotation from Funcotator

    Answered
    1. Community
    2. Somatic

    Hi,  In a project of mine, I used funcotator to annotate somatic mutations using the following command:  java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Ds...

    • Hanbing Song
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    Hanbing Song created a post,

    Issue Regarding CNV_Somatic_Pair Workflow

    1. Community
    2. Somatic

    Hi,  I'm trying to use this workflow on Terra for somatic CNV call using generated PON from normal bams: github.com/broadinstitute/gatk/cnv_somatic_pair_workflow:4.1.7.0 In the config, here are the...

    • Hanbing Song
    • 1 follower
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