lck
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Latest activity by lck-
lck created a post,
CNNScoreVariants in conda environment: CXXABI_1.3.11 not found
I'm trying to run CNNScoreVariants. At this point, I've done a clean install of both miniconda and GATK and have followed the instructions here to set up the gatk environment using conda. I get the...
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lck commented,
Thanks, Anton Kovalsky. I'll follow it there; if you know of any workarounds in the meantime, I'm all ears.
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lck created a post,
Funcotator error: StringIndexOutOfBoundsException
AnsweredI'm running Mutect2 and Funcotator on WES samples on Terra (GATK v4.1.4.0), and am seeing the same reproducible "StringIndexOutOfBoundsException" error on ~6-7% of my samples. It looks like this wa...