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alanhoyle

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  • RExecutor/ProcessExecutor invalid file argument error

    1. Community
    2. General Discussion

    In Picard's RExecutor process, % symbols in the requested output filename cause the R process to crash with a "invalid 'file' argument" generated by R's pdf() function.  The work-around here is to ...

    • alanhoyle
    • Edited
    • 2 followers
    • 4 comments
    • 0 votes

  • Mutect2 parallelize input

    1. Community
    2. Somatic

    Can you please provide a) GATK version used 4.1.7.0b) Exact GATK commands (question about options)c) The entire error log (n/a) I've been running Mutect2 for a while now, currently 4.1.7.0.  Just t...

    • alanhoyle
    • 3 followers
    • 4 comments
    • 0 votes