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Arvind Ravi

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Recent activity by Arvind Ravi Sort by recent activity Recent activity Votes

  • Mutect2 LearnReadOrientationModel Memory Error

    1. Community
    2. Somatic

    Hi, I am running into a memory problem with the LearnReadOrientationModel in a large Mutect2 scatter job. I am performing multisample calling with 50 8X whole genomes scattered 300 ways. I was init...

    • Arvind Ravi
    • 2 followers
    • 5 comments
    • 0 votes

  • Mutect2 for ultrasensitive low coverage calling

    1. Community
    2. Somatic

    Can you please provide a) GATK version used NA b) Exact GATK commands used NA c) The entire error log if applicable. NA   I am trying to perform mutation calling on 50 6-8X whole genomes correspon...

    • Arvind Ravi
    • 3 followers
    • 2 comments
    • 0 votes