Arvind Ravi
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Activity overview
Latest activity by Arvind Ravi-
Arvind Ravi created a post,
Multisample Tumor Only Copy Number Analysis
I have a normal sample and 3 matched tumor samples from the same patient. I am trying to identify early somatic events (e.g., within the first few cell divisions) that may be shared between the nor...
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Arvind Ravi commented,
Still getting the same error with the larger machine mem settings: "Elapsed time: 85.25 minutes. Runtime.totalMemory()=133621612544" There are 50 input files (6X whole genomes) for the call. Any ...
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Arvind Ravi commented,
Thanks Genevieve. I take it that allows the task to offload memory to the disk during execution? I've updated the call as follows but am still running into a memory issue in a 30G mem VM... Command...
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Arvind Ravi created a post,
Mutect2 LearnReadOrientationModel Memory Error
Hi, I am running into a memory problem with the LearnReadOrientationModel in a large Mutect2 scatter job. I am performing multisample calling with 50 8X whole genomes scattered 300 ways. I was init...
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Arvind Ravi created a post,
Mutect2 for ultrasensitive low coverage calling
Can you please provide a) GATK version used NA b) Exact GATK commands used NA c) The entire error log if applicable. NA I am trying to perform mutation calling on 50 6-8X whole genomes correspon...