ABours
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SelectVariants v4.1.6.0 doesn't select the variants as expected
AnsweredHi, I'm subsetting the vcf that I got from GenotypeGVCFs into separate SNP and INDEL vcfs (to hard-filter), with SelectVariants from GATK version 4.1.6.0. However, the program doesn't behave how I ...
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GenotypeGvcfs has formatting issues in both v4.1.6.0 as v4.1.7.0
Hi, I'm using v4.1.6.0 of GenotypeGvcfs to make a vcf, out of whole genome data from 19 samples (following your recommendations). When I run ValidateVariants to check the output of GenotypeGvcfs I ...