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yingchen69

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  • Mutect2 pipeline for liquid biopsy ?

    1. Community
    2. General Discussion

    Hi, Is there any update on the Mutect2 pipeline for liquid biopsy or even the CLIA-approved liquid biopsy pipeline (https://gatk.broadinstitute.org/hc/en-us/articles/360055062832-New-Year-update-GA...

    • yingchen69
    • 4 followers
    • 3 comments
    • 0 votes

  • Mutect2 missing a low AF known deletion

    1. Community
    2. Somatic

    Hi, We have a patient who we are following with Illumina trusight myeloid amplicon panel every other month. In the previous 4 samples we all detected a 9 base deletion in TP53 at chr17:7577542 NM_0...

    • yingchen69
    • 3 followers
    • 4 comments
    • 0 votes

  • Variant called in reads from ArtificialHaplotypeRG

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    1. Community
    2. Somatic

    Hi all, We just found a scenario with Mutect2 (4.1.6.0) in our panel based sequencing data similar to a case reported for HaplotypeCaller (https://gatk.broadinstitute.org/hc/en-us/community/posts/3...

    • yingchen69
    • 3 followers
    • 4 comments
    • 0 votes