yingchen69
- Total activity 12
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 5
Activity overview
Latest activity by yingchen69-
yingchen69 created a post,
Mutect2 pipeline for liquid biopsy ?
Hi, Is there any update on the Mutect2 pipeline for liquid biopsy or even the CLIA-approved liquid biopsy pipeline (https://gatk.broadinstitute.org/hc/en-us/articles/360055062832-New-Year-update-GA...
-
yingchen69 commented,
Hi, Is there any update on the Mutect2 pipeline for liquid biopsy or even the CLIA-approved liquid biopsy pipeline ? Best, Ying
-
yingchen69 commented,
Hi, Is there any update on the Mutect2 pipeline for liquid biopsy or even the CLIA-approved liquid biopsy pipeline (https://gatk.broadinstitute.org/hc/en-us/articles/360055062832-New-Year-update-GA...
-
yingchen69 commented,
Hi Genevieve, Actually it passed the filtering which is a surprise to me. chr17 7577542 . TCATGCCGCC T . PASS AS_FilterStatus=SITE;AS_SB_TABLE=10519,11258|256,292;DP=22325;ECNT=1;GERMQ=93;MBQ=20,20...
-
yingchen69 commented,
Hi Genevieve, Thanks a lot for the suggestion. I ran the tests with the site chr17:7577542 added to the force calling site list and all test runs called the 9 base deletion with AF 0.025 no matter ...
-
yingchen69 created a post,
Mutect2 missing a low AF known deletion
Hi, We have a patient who we are following with Illumina trusight myeloid amplicon panel every other month. In the previous 4 samples we all detected a 9 base deletion in TP53 at chr17:7577542 NM_0...
-
yingchen69 created a post,
Variant called in reads from ArtificialHaplotypeRG
AnsweredHi all, We just found a scenario with Mutect2 (4.1.6.0) in our panel based sequencing data similar to a case reported for HaplotypeCaller (https://gatk.broadinstitute.org/hc/en-us/community/posts/3...